InStrain is a tool for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, microdiversity, and linkage, and sensitive SNP detection with gene localization and synonymous non-synonymous identification
Source code is available on GitHub.
Publication is available on bioRxiv
See links to the left for Installation and Quickstart instructions
Bugs reports and feature requests can be submitted through GitHub.
- Installation and Quickstart
- Overview and FAQ
- Program documentation
- Example output and explanations
- Advanced use