InStrain is a tool for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, microdiversity, and linkage, and sensitive SNP detection with gene localization and synonymous non-synonymous identification
Source code is available on GitHub.
Publication is available on bioRxiv
See links to the left for Installation instructions
Bugs reports and feature requests can be submitted through GitHub.
- Glossary & FAQ
- User Manual
- Example output
- Important concepts and API