Index

A

ANI

B

bam file

breadth

C

clonality conANI

contig coverage

D

divergent site

dN/dS

E

expected breadth

F

fasta file

G

genes file

Genome database

I

inStrain profile

iRep

L

linkage

M

mapQ score microdiversity mismapped read

mm multi-mapped read mutation type

N

nucleotide diversity

null model

P

pN/pS

popANI

R

relative abundance

S

scaffold scaffold-to-bin file SNP

SNS SNV Species representative genome