Installation¶
Installation¶
InStrain is written in python. There are a number of ways that is can be installed.
Pip¶
To install inStrain using the PyPi python repository, simply run
$ pip install instrain
That’s it!
Pip is a great package with many options to change the installation parameters in various ways. For details, see pip documentation
Bioconda¶
To inStrain inStrain from bioconda, run
$ conda config --add channels bioconda; conda install instrain
From Source¶
To install inStrain from the source code, run
$ git clone https://github.com/MrOlm/instrain.git
$ cd instrain
$ pip install .
Docker image¶
A Docker image with inStrain and dependencies already installed is available on Docker Hub at mattolm/instrain. This image also has a wrapper script in it to make it easier to use inStrain with AWS. See the docker folder of the GitHub page for use instructions.